SNP Profiles matching OC 61

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AA	CC	GT	CT	AT	AA	TT	AA	CT
1._ICS_48	CT	AG	GG	CT	TT	AA	CC	GT	CT	AT	AA	CT	AA	CT
2._ICS_95	CT	AG	GG	TT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
3._ICS_95	CT	AG	GG	TT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
4._ICS_95	CT	AG	GG	TT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
5._ICS_95	CT	AG	GG	TT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT
6._ICS_40	_	_	GG	CT	TT	AA	_	GT	CT	AA	AA	CT	AA	CT
7._RUQ_1144	CT	AG	_	TT	TT	AA	CC	GT	CT	AA	AA	CT	AA	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CC	CG	TT	AG	CT	CC	CG	GT	CC	CC	AG
1._ICS_48	AA	GG	TT	CC	CG	TT	AG	CT	AC	CG	GT	CT	CC	AG
2._ICS_95	AA	GG	TT	CC	CG	TT	AG	CT	CC	CC	GT	CT	CC	AG
3._ICS_95	AA	GG	TT	CC	CG	TT	AG	CT	CC	CC	GT	CT	CC	AG
4._ICS_95	AA	GG	TT	CC	CG	TT	AG	CT	CC	CC	GT	CT	CC	AG
5._ICS_95	AA	GG	TT	CC	CG	TT	AG	CT	CC	CC	GT	CT	CC	AG
6._ICS_40	AA	GG	TT	CC	CG	GT	AG	CT	_	CC	GT	CT	CC	AG
7._RUQ_1144	AA	GG	TT	CC	CG	TT	AG	CT	CC	CC	GT	CT	CC	AG

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AT	CT	GG	AC	TT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
1._ICS_48	GG	AT	CT	AG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
2._ICS_95	GG	AT	CT	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
3._ICS_95	GG	AT	CT	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
4._ICS_95	GG	AT	CT	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
5._ICS_95	GG	AT	CT	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X
6._ICS_40	GG	_	CT	AG	AC	_	GT	AC	AT	GG	X_X	X_X	X_X	X_X
7._RUQ_1144	GG	AT	CT	GG	AC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: OC_61_[VEN]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A C317 T1

Dapeng Zhang, 2016

1._ICS_48

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E318 T6

Dapeng Zhang, 2016

2._ICS_95

90.8 %
38 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

3._ICS_95

90.8 %
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P26 56

Dapeng Zhang, 2016

4._ICS_95

90.8 %
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 10 C0204 2A

Dapeng Zhang, 2016

5._ICS_95

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block1

Dapeng Zhang, 2016

6._ICS_40

90.6 %
32 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block2

Dapeng Zhang, 2016

7._ICS_95 RUQ_1144

90.5 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25

SNP Profiles matching OC 61

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Input profile: OC_61_[VEN]

1._ICS_48

92.1 % 38 shared markers

2._ICS_95

90.8 % 38 shared markers

3._ICS_95

90.8 % 38 shared markers

4._ICS_95

90.8 % 38 shared markers

5._ICS_95

90.8 % 38 shared markers

6._ICS_40

90.6 % 32 shared markers

7._ICS_95 RUQ_1144

90.5 % 37 shared markers

92.1 %
38 shared markers

90.8 %
38 shared markers

90.8 %
38 shared markers

90.8 %
38 shared markers

90.8 %
38 shared markers

90.6 %
32 shared markers

90.5 %
37 shared markers